- Argo - Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
- BioKin, Ltd. - Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
- Blue Tractor Software - Java based commercial software for DNA and Protein sequence analysis. Demo available.
- Cognia - Provides tools research analysis in genomics, signal transduction and molecular biology.
- DNA Sequencing Software - software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
- DoMix Scientific Software - Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
- eLABorate Packages - Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK.
- EnzymeX - Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
- FinchTV - Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux & Solaris. Uses QT library.
- Insilico Biotechnology - Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
- JaMBW - Java based biologist's workbench by Luca I.G.Toldo.
- MacVector - Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.
- Mekentosj software - Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
- Molecular Biology Software Links - Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
- Phenosystems - Offers the Gensearch software to locate and analyse potential mutation locations.
- SoftZymics - Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.
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